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ATP6AP1

Chr Xq28

ATPase H+ transporting accessory protein 1

Aliases:
ORF, XAP-3, VATPS1, 16A, Ac45
MANE:
ENST00000369762.7

Annotations refreshed 1 month ago.

Predicted protein structure

Clinical relevance (Genomics England PanelApp)

Diagnostic Grade (Green)

  • Congenital disorders of glycosylation

    X-LINKED: hemizygous mutation in males, biallelic mutations in females
  • COVID-19 research

    X-LINKED: hemizygous mutation in males, biallelic mutations in females
  • Likely inborn error of metabolism

    X-LINKED: hemizygous mutation in males, biallelic mutations in females
  • Primary immunodeficiency or monogenic inflammatory bowel disease

    X-LINKED: hemizygous mutation in males, biallelic mutations in females
  • Undiagnosed metabolic disorders

    X-LINKED: hemizygous mutation in males, biallelic mutations in females
  • Intellectual disability

    X-LINKED: hemizygous mutation in males, biallelic mutations in females
  • Childhood onset dystonia, chorea or related movement disorder

Disease associations (Open Targets)

  • immunodeficiency 47

    0.79
  • neurodegenerative disease

    0.53
  • congenital disorder of glycosylation type II

    0.37
  • hereditary disease

    0.19
  • ALG2-congenital disorder of glycosylation

    0.12
  • breast cancer

    0.11
  • breast carcinoma

    0.10
  • colorectal carcinoma

    0.08
  • reading

    0.07
  • neoplasm

    0.06

Score is the Open Targets composite evidence score (0-1). Higher = stronger gene-disease association.

Protein function (UniProt)

V-type proton ATPase subunit S1

Accessory subunit of the V0 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons (PubMed:28296633, PubMed:33065002). V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments and in some cell types, is targeted to the plasma membrane, where it promotes acidification of the extracellular environment (PubMed:28296633, PubMed:33065002). The V-ATPase complex also acts as an activator for mTORC1 on lysosomal membrane by promoting the guanine nucleotide exchange factor (GEF) of the Ragulator complex, thereby enabling mTORC1 recruitment (PubMed:22053050). Guides the V-type ATPase into specialized subcellular compartments, such as neuroendocrine regulated secretory vesicles or the ruffled border of the osteoclast, thereby regulating its activity (PubMed:27231034). Involved in membrane trafficking and Ca(2+)-dependent membrane fusion (PubMed:27231034). May play a role in the assembly of the V-type ATPase complex (Probable). In aerobic conditions, involved in intracellular iron homeostasis, thus triggering the activity of Fe(2+) prolyl hydroxylase (PHD) enzymes, and leading to HIF1A hydroxylation and subsequent proteasomal degradation (PubMed:28296633). In islets of Langerhans cells, may regulate the acidification of dense-core secretory granules (By similarity)

Data sources: HGNC (CC BY 4.0), AlphaFold (CC BY 4.0, Jumper et al. Nature 2021), Genomics England PanelApp (CC BY 4.0), ClinGen, Open Targets (CC0), UniProt.

Not for sole clinical decision-making. Always verify against primary sources.