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COL9A1

Chr 6q13

collagen type IX alpha 1 chain

MANE:
ENST00000357250.11

Annotations refreshed 1 month ago.

Predicted protein structure

Clinical relevance (Genomics England PanelApp)

Diagnostic Grade (Green)

  • Clefting

    BIALLELIC, autosomal or pseudoautosomal
  • DDG2P

    BOTH monoallelic and biallelic, autosomal or pseudoautosomal
  • Fetal anomalies

    BOTH monoallelic and biallelic, autosomal or pseudoautosomal
  • Monogenic hearing loss

    BIALLELIC, autosomal or pseudoautosomal
  • Retinal disorders

    BIALLELIC, autosomal or pseudoautosomal
  • Skeletal dysplasia

    BOTH monoallelic and biallelic, autosomal or pseudoautosomal
  • Stickler syndrome

    BIALLELIC, autosomal or pseudoautosomal
  • Glaucoma (developmental)

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Disease associations (Open Targets)

  • Stickler syndrome

    0.76
  • epiphyseal dysplasia, multiple, 6

    0.69
  • Stickler syndrom, recessive

    0.60
  • multiple epiphyseal dysplasia due to collagen 9 anomaly

    0.47
  • connective tissue disorder

    0.44
  • hearing loss disorder

    0.40
  • multiple epiphyseal dysplasia

    0.38
  • Sensorineural hearing impairment

    0.37
  • osteoarthritis

    0.35
  • hereditary disease

    0.34

Score is the Open Targets composite evidence score (0-1). Higher = stronger gene-disease association.

Protein function (UniProt)

Collagen alpha-1(IX) chain

Structural component of hyaline cartilage and vitreous of the eye

Curated MONDO disease pages that list COL9A1 among their top associated genes.

Data sources: HGNC (CC BY 4.0), AlphaFold (CC BY 4.0, Jumper et al. Nature 2021), Genomics England PanelApp (CC BY 4.0), ClinGen, Open Targets (CC0), UniProt.

Not for sole clinical decision-making. Always verify against primary sources.