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GenoLensGenoLens

LDLR

Chr 19p13.2

low density lipoprotein receptor

Aliases:
LDLCQ2
MANE:
ENST00000558518.6

Annotations refreshed 1 month ago.

Predicted protein structure

Clinical relevance (Genomics England PanelApp)

Diagnostic Grade (Green)

  • Additional findings health related

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Additional findings health related - children

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Additional findings health related - CNV analysis children

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Familial hypercholesterolaemia

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Familial hypercholesterolaemia (GMS)

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Likely inborn error of metabolism

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Undiagnosed metabolic disorders

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Childhood onset dystonia, chorea or related movement disorder

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Disease associations (Open Targets)

  • hypercholesterolemia, familial, 1

    0.88
  • Hypercholesterolemia

    0.85
  • familial hypercholesterolemia

    0.81
  • homozygous familial hypercholesterolemia

    0.76
  • coronary artery disorder

    0.76
  • metabolic disease

    0.74
  • heart disorder

    0.71
  • hyperlipidemia

    0.71
  • angina pectoris

    0.69
  • Disorder of lipid metabolism

    0.69

Score is the Open Targets composite evidence score (0-1). Higher = stronger gene-disease association.

Protein function (UniProt)

Low-density lipoprotein receptor

Binds low density lipoprotein /LDL, the major cholesterol-carrying lipoprotein of plasma, and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Forms a ternary complex with PGRMC1 and TMEM97 receptors which increases LDLR-mediated LDL internalization (PubMed:30443021)

Curated MONDO disease pages that list LDLR among their top associated genes.

Data sources: HGNC (CC BY 4.0), AlphaFold (CC BY 4.0, Jumper et al. Nature 2021), Genomics England PanelApp (CC BY 4.0), ClinGen, Open Targets (CC0), UniProt.

Not for sole clinical decision-making. Always verify against primary sources.