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SCLT1

Chr 4q28.2

sodium channel and clathrin linker 1

Aliases:
hCAP-1A, FLJ30655
MANE:
ENST00000281142.10

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Predicted protein structure

Clinical relevance (Genomics England PanelApp)

Diagnostic Grade (Green)

  • Fetal anomalies

    BIALLELIC, autosomal or pseudoautosomal
  • Neurological ciliopathies

    BIALLELIC, autosomal or pseudoautosomal
  • Ophthalmological ciliopathies

    BIALLELIC, autosomal or pseudoautosomal
  • Rare multisystem ciliopathy disorders

    BIALLELIC, autosomal or pseudoautosomal
  • Renal ciliopathies

    BIALLELIC, autosomal or pseudoautosomal
  • Retinal disorders

    BIALLELIC, autosomal or pseudoautosomal
  • Structural eye disease

    BIALLELIC, autosomal or pseudoautosomal
  • Thoracic dystrophies

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Disease associations (Open Targets)

  • Retinal dystrophy

    0.52
  • Sjogren-Larsson syndrome

    0.47
  • Bardet-Biedl syndrome

    0.44
  • congenital hypothalamic hamartoma syndrome

    0.41
  • Nystagmus

    0.41
  • Global developmental delay

    0.41
  • Opsoclonus

    0.41
  • Astigmatism

    0.41
  • Hypermetropia

    0.41
  • Fetal anomaly

    0.37

Score is the Open Targets composite evidence score (0-1). Higher = stronger gene-disease association.

Protein function (UniProt)

Sodium channel and clathrin linker 1

Adapter protein that links SCN10A to clathrin. Regulates SCN10A channel activity, possibly by promoting channel internalization (By similarity)

Data sources: HGNC (CC BY 4.0), AlphaFold (CC BY 4.0, Jumper et al. Nature 2021), Genomics England PanelApp (CC BY 4.0), ClinGen, Open Targets (CC0), UniProt.

Not for sole clinical decision-making. Always verify against primary sources.