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SETD5

Chr 3p25.3

SET domain containing 5

Aliases:
FLJ10707, SETD5A
MANE:
ENST00000402198.7

Annotations refreshed 10 hours ago.

Predicted protein structure

Clinical relevance (Genomics England PanelApp)

Diagnostic Grade (Green)

  • DDG2P

    MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
  • Early onset or syndromic epilepsy

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Fetal anomalies

    MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
  • Intellectual disability

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Skeletal dysplasia

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Cerebral vascular malformations

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
  • Monogenic short stature

    MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Disease associations (Open Targets)

  • intellectual disability-facial dysmorphism syndrome due to SETD5 haploinsufficiency

    0.82
  • hereditary disease

    0.55
  • autosomal dominant non-syndromic intellectual disability

    0.53
  • Intellectual disability

    0.51
  • neurodegenerative disease

    0.45
  • neurodevelopmental disorder

    0.44
  • developmental disability

    0.44
  • KBG syndrome

    0.43
  • Neurodevelopmental abnormality

    0.42
  • type 2 diabetes mellitus

    0.39

Score is the Open Targets composite evidence score (0-1). Higher = stronger gene-disease association.

Protein function (UniProt)

Histone-lysine N-methyltransferase SETD5

Chromatin regulator required for brain development: acts as a regulator of RNA elongation rate, thereby regulating neural stem cell (NSC) proliferation and synaptic transmission. May act by mediating trimethylation of 'Lys-36' of histone H3 (H3K36me3), which is essential to allow on-time RNA elongation dynamics. Also monomethylates 'Lys-9' of histone H3 (H3K9me1) in vitro. The relevance of histone methyltransferase activity is however subject to discussion

Data sources: HGNC (CC BY 4.0), AlphaFold (CC BY 4.0, Jumper et al. Nature 2021), Genomics England PanelApp (CC BY 4.0), ClinGen, Open Targets (CC0), UniProt.

Not for sole clinical decision-making. Always verify against primary sources.