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VPS13D

Chr 1p36.22-p36.21

vacuolar protein sorting 13 homolog D

Aliases:
FLJ10619, KIAA0453, BLTP5D
MANE:
ENST00000620676.6

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Predicted protein structure

Clinical relevance (Genomics England PanelApp)

Diagnostic Grade (Green)

  • Ataxia and cerebellar anomalies - narrow panel

    BIALLELIC, autosomal or pseudoautosomal
  • Childhood onset dystonia, chorea or related movement disorder

    BIALLELIC, autosomal or pseudoautosomal
  • Hereditary ataxia

    BIALLELIC, autosomal or pseudoautosomal
  • Hereditary ataxia with onset in adulthood

    BIALLELIC, autosomal or pseudoautosomal
  • Hereditary neuropathy or pain disorder

    BIALLELIC, autosomal or pseudoautosomal
  • Adult onset neurodegenerative disorder

    BIALLELIC, autosomal or pseudoautosomal

Disease associations (Open Targets)

  • autosomal recessive cerebellar ataxia-saccadic intrusion syndrome

    0.80
  • Autosomal recessive cerebellar ataxia - saccadic intrusion

    0.78
  • neurodegenerative disease

    0.53
  • hereditary disease

    0.42
  • autosomal recessive cerebellar ataxia

    0.34
  • Leigh syndrome

    0.30
  • chronic atrophic gastritis

    0.29
  • spinocerebellar ataxia type 4

    0.27
  • Spinocerebellar atrophy

    0.27
  • male infertility

    0.27

Score is the Open Targets composite evidence score (0-1). Higher = stronger gene-disease association.

Protein function (UniProt)

Intermembrane lipid transfer protein VPS13D

Mediates the transfer of lipids between membranes at organelle contact sites (By similarity). Functions in promoting mitochondrial clearance by mitochondrial autophagy (mitophagy), also possibly by positively regulating mitochondrial fission (PubMed:29307555, PubMed:29604224). Mitophagy plays an important role in regulating cell health and mitochondrial size and homeostasis

Data sources: HGNC (CC BY 4.0), AlphaFold (CC BY 4.0, Jumper et al. Nature 2021), Genomics England PanelApp (CC BY 4.0), ClinGen, Open Targets (CC0), UniProt.

Not for sole clinical decision-making. Always verify against primary sources.