AlphaFold predicted structure
VPS53 · Q5VIR6

Mean pLDDT
80.2/ 100
Confident
832 residues
Confidence breakdown
- Very high(≥ 90)45%
- Confident(70–90)34%
- Low(50–70)8%
- Very low(< 50)13%
AlphaFold (Jumper et al., 2021) · CC BY 4.0
VPS53 subunit of GARP complex
Annotations refreshed 1 month ago.
Diagnostic Grade (Green)
DDG2P
BIALLELIC, autosomal or pseudoautosomalFetal anomalies
BIALLELIC, autosomal or pseudoautosomalHereditary ataxia with onset in adulthood
BIALLELIC, autosomal or pseudoautosomalIntellectual disability
BIALLELIC, autosomal or pseudoautosomalAtaxia and cerebellar anomalies - narrow panel
BIALLELIC, autosomal or pseudoautosomalCerebellar hypoplasia
BIALLELIC, autosomal or pseudoautosomalAdult onset neurodegenerative disorder
BIALLELIC, autosomal or pseudoautosomalChildhood onset dystonia, chorea or related movement disorder
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pontocerebellar hypoplasia type 2E
progressive cerebello-cerebral atrophy
neurodegenerative disease
prostate carcinoma
prostate cancer
pontocerebellar hypoplasia
Global developmental delay
Intellectual disability
type 2 diabetes mellitus
Non-syndromic pontocerebellar hypoplasia
Score is the Open Targets composite evidence score (0-1). Higher = stronger gene-disease association.
Vacuolar protein sorting-associated protein 53 homolog
Acts as a component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). The GARP complex is required for the maintenance of the cycling of mannose 6-phosphate receptors between the TGN and endosomes, this cycling is necessary for proper lysosomal sorting of acid hydrolases such as CTSD (PubMed:15878329, PubMed:18367545). Acts as a component of the EARP complex that is involved in endocytic recycling. The EARP complex associates with Rab4-positive endosomes and promotes recycling of internalized transferrin receptor (TFRC) to the plasma membrane (PubMed:25799061)
VPS53 · Q5VIR6

Mean pLDDT
80.2/ 100
Confident
832 residues
Confidence breakdown
AlphaFold (Jumper et al., 2021) · CC BY 4.0